Figure 3

Yeast cell cycle KEGG pathway and reconstructed network by three different algorithms. a) is the yeast cell cycle KEGG pathway; b) is the TNSI inferred graph; c) is the TimeDelay-ARACNE inferred graph; d) is the Banjo inferred graph. TSNI and Banjo are used with default settings reported in their manuals. TimeDelay-ARACNE better recover this yeast network topology than other algorithms. Here we represent true positives as straight connections, dotted lines are false positives, false negatives are not reported and considered in the tables of PPV and recall. Missing verse on the connection means that the algorithm recovers the wrong verse.