Skip to main content

Table 3 Alignment time of 4 complete genomes of Streptococcus pyogenes with various settings of MISHIMA

From: MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data

Method

Alignment time

MISHIMA -max-depth = 1 -aligner = clustalw

10:08:52

MISHIMA -max-depth = 2 -aligner = clustalw

02:54:48

MISHIMA -max-depth = 3 -aligner = clustalw

02:33:44

MISHIMA (unlimited depth) -aligner = clustalw

02:43:03

MISHIMA -max-depth = 1 -align-seeds-only

00:00:27