From: RNAstructure: software for RNA secondary structure prediction and analysis
Feature: | Text Interface Program: | JAVA/Windows GUI Menu Item: | Class Library and Function Name: |
---|---|---|---|
dynalign | Dynalign RNA | Dynalign_object::Dynalign | |
OligoWalk | OligoWalk | Oligowalk_object::Oligowalk | |
OligoScreen [55] | oligoscreen | OligoScreen | Oligowalk_object::OligoScreen |
Bimolecular structure prediction with intramolecular pairs [33] | bifold | Fold RNA Bimolecular | HybridRNA::FoldBimolecular |
PARTS | - | - | |
Bimolecular partition function (no intramolecular pairs) [31] | bipartition | Partition Function RNA Bimolecular | HybridRNA::PartitionFunctionBimolecular |
Bimolecular structure prediction without intramolecular pairs | DuplexFold | - | HybridRNA::FoldDuplex |