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Table 2 Comparison of spectral clustering with other methods

From: SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale

 

# sequences

Hierarchical clustering

CCA

TribeMCL

Spectral clustering

Dataset 1

669

0.247

0.530

0.630

0.844

Dataset 2

587

0.373

0.681

0.772

0.905

Dataset 3

567

0.253

0.588

0.625

0.893

Dataset 4

654

0.302

0.497

0.573

0.685

   SCOP ≥5

14,183

0.393

0.530

0.576

0.607

  1. The best F-score for each dataset is highlighted in bold.