Automatic prediction of catalytic residues by modeling residue structural neighborhood

BMC Bioinformatics

Table 9 Comparison with the best results reported for the POOL structured-based method [20] on their benchmark dataset of 160 proteins.

		Performance %
	Method/Dataset	AvgP	AvgR	*AUCROC*
1.	POOL(T)POOL(G)POOL(C)/allprotein (Tong et al. [20])	19.07	64.68	0.925
2.	SVM_P 24_1D_1-3, 3D_1-6 at Equal Precision	19.07	78.10	0.948
3.	SVM_P 24_1D_1-3, 3D_1-6 at Equal Recall	26.61	64.68	0.948

Performance measures include: the average per-protein precision at equal recall, the average recall at equal precision, and the average area under the ROC curve (AUCROC). Results are obtained without including ligand information.

ISSN: 1471-2105