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Table 2 Structured-based features.

From: Automatic prediction of catalytic residues by modeling residue structural neighborhood

Features

Description

3D1

Physical and chemical properties (amino acid attributes)

3D2

Amino acidic composition

3D3

Charge/Neutrality

3D4

Water molecule quantity

3D5

Atomic density

3D6

Flexibility B-factor

3D7

Disulphide bond

3D8

Heterogens

3D9

Cofactor binding

  1. Representation: scalar features extracted from the residue structural neighborhood.