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Table 1 Experimental results on the RNA-protein sequence data set. Experimental results with Naive Bayes (NB) and Logistic Regression (LR) models, and Mixture of Experts (ME) models on the non-redundant RNA-protein sequence data set, where the identity cutoffs are 30% and 90%. The results are shown for default threshold θ = 0.5. ME-NB-global and ME-LR-global use NB and LR at the leaves and exploits the global sequence similarity to construct the hierarchical structure. ME-NB-local exploits the local sequence similarity to construct the hierarchical structure. ME-NB-random randomizes the global similarity matrix and constructs the hierarchical structure based on the randomized matrix.

From: Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling

 

RNA-protein 30%

RNA-protein 90%

Classifier

Precision

Recall

CC

FM

AUC

Precision

Recall

CC

FM

AUC

NB

0.58

0.25

0.31

0.35

0.75

0.58

0.30

0.33

0.40

0.77

ME-NB-global

0.61

0.27

0.34

0.38

0.77

0.61

0.32

0.36

0.42

0.78

ME-NB-local

0.62

0.25

0.33

0.35

0.76

0.61

0.30

0.34

0.40

0.77

ME-NB-random

0.59

0.24

0.31

0.35

0.75

0.59

0.30

0.33

0.40

0.77

LR

0.62

0.18

0.28

0.29

0.76

0.63

0.23

0.31

0.34

0.77

ME-LR-global

0.60

0.23

0.31

0.34

0.77

0.61

0.27

0.33

0.38

0.78