Table 6 Comparison of performance against the state-of-the-art methods for remote homology detection
From: Efficient use of unlabeled data for protein sequence classification: a comparative study
PDB | Swiss-Prot | NR | ||||
|---|---|---|---|---|---|---|
ROC | ROC50 | ROC | ROC50 | ROC | ROC50 | |
triple(1,3), full seq. | .9475 | .7582 | .9245 | .6908 | .9419 | .7327 |
triple(1,3), region | .9708 | .8265 | .9752 | .8556 | .9824 | .8861 |
triple(1,3), region, clustering | .9716 | .8246 | .9732 | .8605 | .9861 | .8944 |
mismatch(5,1), full seq. | .9389 | .7203 | .9253 | .6685 | .9423 | .7233 |
mismatch(5,1), region | .9698 | .8048 | .9757 | .8280 | .9837 | .8824 |
mismatch(5,1), region, clustering | .9705 | .8038 | .9773 | .8414 | .9874 | .8885 |
profile(5,7.5) | .9511 | .7205 | .9709 | .7914 | .9734 | .8151 |