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Table 3 Classification performance of the k-spectrum method using nearest neighbor

From: Efficient alignment-free DNA barcode analytics

dataset

k = 3

k = 5

k = 8

k = 10

k = 15

1-NN (nearest neighbor)

ACG

4.24 ± 0.90

3.19 ± 0.93

2.58 ± 0.94

2.49 ± 0.87

2.35 ± 0.83

Hesperiidae

5.32 ± 1.33

4.21 ± 1.18

3.66 ± 1.07

3.57 ± 1.08

3.39 ± 0.93

Astraptes

1.91 ± 1.87

1.90 ± 2.08

1.48 ± 1.75

1.07 ± 1.81

1.07 ± 1.81

Bats of Guyana

1.87 ± 1.36

1.63 ± 1.22

1.63 ± 1.22

1.63 ± 1.22

1.63 ± 1.22

Birds

7.77 ± 1.26

6.68 ± 1.22

6.42 ± 1.34

6.22 ± 1.50

6.13 ± 1.65

Fish Australia

5.47 ± 3.26

5.35 ± 3.36

5.35 ± 3.36

5.50 ± 3.27

5.50 ± 3.27

Fish larvae

8.57

5.71

2.86

2.86

2.86

3-NN

ACG

10.20 ± 1.31

8.98 ± 1.23

8.54 ± 1.11

8.67 ± 1.33

8.63 ± 1.21

Hesperiidae

15.55 ± 1.25

14.30 ± 1.46

14.22 ± 1.50

14.40 ± 1.85

14.30 ± 2.00

Astraptes

2.78 ± 2.49

2.36 ± 2.16

2.36 ± 2.16

2.15 ± 2.29

1.70 ± 1.96

Bats of Guyana

3.77 ± 1.68

4.46 ± 2.06

4.35 ± 2.01

4.46 ± 2.06

4.46 ± 2.06

Birds

20.23 ± 2.64

19.58 ± 2.48

18.88 ± 2.29

18.99 ± 2.22

18.37 ± 2.07

Fish Australia

12.44 ± 5.67

12.32 ± 5.68

12.31 ± 5.38

12.42 ± 5.46

11.93 ± 5.06

Fish larvae

14.29

14.29

11.43

11.43

11.43

5-NN

ACG

13.41 ± 2.00

12.42 ± 1.40

11.49 ± 1.28

11.49 ± 1.25

11.28 ± 1.20

Hesperiidae

19.70 ± 1.71

19.64 ± 2.62

18.63 ± 2.21

18.54 ± 2.17

18.22 ± 2.17

Astraptes

3.43 ± 3.09

3.01 ± 2.76

2.14 ± 1.74

1.70 ± 1.96

1.06 ± 1.12

Bats of Guyana

6.09 ± 3.01

5.85 ± 3.23

5.73 ± 2.77

5.87 ± 2.94

5.61 ± 2.79

Birds

27.32 ± 2.50

26.26 ± 2.17

26.49 ± 2.11

26.42 ± 2.44

26.10 ± 2.36

Fish Australia

19.40 ± 5.91

18.85 ± 6.15

19.28 ± 5.28

18.36 ± 5.04

18.81 ± 4.64

Fish larvae

22.86

22.86

22.86

22.86

22.86