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Table 16 Running time (kernel computation), s

From: Efficient alignment-free DNA barcode analytics

Dataset

PSI-BLAST

Smith-Waterman

spectrum (k = 10)

mismatch

ACG

2557

64818

60.328

366.39

Hesperiidae

891

19378

16.16

90.26

Astraptes

99

854

0.89

2.15

Bats

239

2818

1.91

12.12

Birds

1147

27311

18.75

149.67

Fish Australia

203

3424

1.57

9.95

Fish larvae

1.9

39.58

0.23

0.16