Table 2 Comparison our method with other methods for predicting the antigenic variants on 31,878 pairs
From: Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses
Antigenic variants | Wilson & Cox, 1990 [9] | Lee & Chen, 2004 [5] | Our method | Similar viruses | Wilson & Cox, 1990 [9] | Lee & Chen, 2004 [5] | Our method |
|---|---|---|---|---|---|---|---|
HK68-EN72 (210 1) | 210 | 206 | 210 | HK68 (91 1) | 24 | 52 | 37 |
EN72-VI75 (135) | 135 | 135 | 135 | EN72 (105) | 36 | 79 | 48 |
VI75-TX77 (27) | 27 | 27 | 27 | VI75 (36) | 30 | 36 | 21 |
TX77-BA79 (48) | 48 | 48 | 45 | TX77 (3) | 1 | 2 | 1 |
BA79-SI87 (400) | 400 | 381 | 400 | BA79 (120) | 13 | 46 | 58 |
SI87-BE89 (1600) | 1577 | 863 | 1600 | SI87 (300) | 125 | 233 | 276 |
BE89-BE92 (3648) | 3648 | 3648 | 3648 | BE89 (2016) | 872 | 1725 | 2016 |
BE92-WU95 (1596) | 1542 | 1391 | 1562 | BE92 (1596) | 372 | 928 | 732 |
WU95-SY97 (448) | 448 | 448 | 448 | WU95 (378) | 53 | 156 | 325 |
SY97-FU02 (96) | 96 | 96 | 96 | SY97 (120) | 24 | 65 | 120 |
Other inter clusters (18890) | 18889 | 18870 | 18855 | FU02 (15) | 15 | 15 | 15 |
Number of predicted pairs | 27020 | 26113 | 27026 | Number of predicted pairs | 1565 | 3337 | 3649 |
Accuracy | 99.71% | 96.37% | 99.73% | Accuracy | 32.74% | 69.81% | 76.34% |