Figure 4
Top 100 structures for the skeletons in 1LRE(PDB Id). The constructed atomic structures for the helix skeletons were ranked by the contact energy (top panel). A topology Id (bottom panel) includes six digits. The first three digits represent the permutation of the assignment, and the last three represent the relative direction (0, or 1) between the sequence segment and the skeleton for each of the skeletons. The RMSD (middle panel) to the native structure is shown for each of the 100 constructed structures for the skeletons. The constructed structure with the smallest RMSD to native (the 17th of the 100) is marked in red for its topology and the RMSD.