Figure 5
From: SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Comparison of CPU times of SE and DP in SHEBA. The CPU time to execute the SE and DP routine in SHEBA are plotted for each structure pair against the product of the lengths of the two proteins. (A) Average CPU time to execute one cycle of SE or DP. (B) CPU time to complete the Kabsch-SE and Kabsch-DP procedure, which involves multiple cycles of SE or DP and the Kabsch superposition process.