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Figure 3 | BMC Bioinformatics

Figure 3

From: HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

Figure 3

The HHMM state model (based on the microRNA hairpin template). The oval shaped nodes represent the internal states. The colours correspond to the biological region presented in Figure 2a. The circular solid lined nodes correspond to the production states. The dotted lined states correspond to the silent end states. M: Match states, N: Mismatch states, I: Indel states, Lend: Loop end state, Rend: miRNA end state, Pend: pri-extension end state.

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