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Table 4 Top 20 target genes associated with stress responses.

From: Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

Locus ID

miRNA

Rate

Description

At5g43760

miR854

0.88

A member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA

At5g47250

miR472

0.79

Disease resistance protein

At3g20710

miR859

0.79

F-box/Kelch-repeat protein

At2g36890*

miR847

0.60

Myb-like transcription factor MYB38

At4g28310

miR837-5p

0.60

Unknown protein

At5g41410

miR414

0.55

Homeodomain protein required for ovule identity

At2g25980

miR846

0.53

Jacalin lectin family protein

At5g57590

miR396

0.52

Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase

At1g49750

miR854

0.47

Leucine-rich repeat family protein

At5g39710

miR400

0.47

Similar to pentatricopeptide (PPR) repeat-containing protein

At3g13690

miR419

0.47

Protein kinase family protein

At3g18980

miR859

0.45

F-box family protein

At5g43730

miR472

0.45

Disease resistance protein

At2g32760

miR414

0.43

Unknown protein

At1g74840*

miR863-5p

0.43

Myb family transcription factor

At1g80340

miR835-5p

0.42

Encodes a protein with gibberellin 3 β-hydroxylase activity

At1g26210

miR414

0.41

unknown protein

At2g17830

miR859

0.41

F-box family protein

At4g14680

miR395

0.40

ATP sulfurylase

At5g61480

miR870

0.38

Leucine-rich repeat transmembrane protein kinase

  1. The targets were predicted with the expression dataset of stress treatments. The rate indicates the fraction of runs in which the gene was predicted as a positive in 200 runs. * indicates the gene reported to be involved in the stress responses.