Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

Table 3 Top 20 target genes associated with the developmental series.

Locus ID	miRNA	Rate	Description
At1g69440*	miR854	0.97	Encodes ARGONAUTE7
At1g62930	miR400	0.83	Similar to pentatricopeptide (PPR) repeat-containing protein
At5g47250	miR472	0.82	Disease resistance protein
At3g15270*	miR156	0.78	Squamosa promoter-binding protein-like 5
At5g59000	miR414	0.77	Zinc finger family protein
At4g31610*	miR414	0.77	REM1 (Reproductive Meristem 1) transcription factor
At5g58980	miR396	0.77	Ceramidase family protein
At5g43730	miR472	0.76	Disease resistance protein
At4g15430	miR855	0.72	Similar to early-responsive to dehydration protein-related
At5g08430	miR414	0.70	SWIB complex BAF60b domain-containing protein/plus-3 domain-containing protein
At2g28510	miR829	0.69	Dof-type zinc finger domain-containing protein
At5g48560	miR778	0.69	Basic helix-loop-helix (bHLH) family protein
At1g27360	miR156	0.68	Squamosa promoter-binding protein-like 11
At3g53310	miR414	0.65	Transcriptional factor B3 family protein
At2g42200*	miR156	0.64	Squamosa promoter-binding protein-like 9
At1g63130	miR400	0.62	Transacting siRNA generating locus
At3g20910	miR169	0.62	CCAAT-binding transcription factor
At2g34960	miR157	0.61	Encodes a member of the cationic amino acid transporter
At1g62670	miR161	0.61	Pentatricopeptide (PPR) repeat-containing protein
At3g57670*	miR854	0.57	Similar to zinc finger

The targets were predicted with the expression dataset of the developmental series. The rate indicates the fraction of runs in which the gene was predicted as a positive in 200 runs. * indicates the gene reported to be involved in the developmental process.

ISSN: 1471-2105