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Figure 1 | BMC Bioinformatics

Figure 1

From: Genome aliquoting with double cut and join

Figure 1

Duplicated genomes. Two different genomes both with three chromosomes, four unique genes each with three paralogs. (a) The rearranged duplicated genome represented by the unordered set { { a 1 > } , { a 1 , b 1 > } , { b 1 , c 1 } , { c 1 > , a 2 } , { a 2 > , c 2 } , { c 2 > , d 1 } , { d 1 > } , { d 2 > } , { d 2 , c 3 > } , { c 3 , a 3 > } , { a 3 , b 2 > } { b 2 } , { b 3 } , { b 3 > , d 3 } , { d 3 > } } MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=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@DE8D@ . (b) The perfectly duplicated genome represented by the unordered set { { b 1 } , { b 1 > , a 1 } , { a 1 > , c 1 } , { c 1 > , d 3 } , { d 3 > } , { b 3 > } , { b 3 > , a 2 } , { a 2 > , c 2 } , { c 2 > , d 1 } , { d 1 > } , { b 2 } , { b 2 > , a 3 } , { a 3 > , c 3 } , { c 3 > , d 2 } , { d 2 > } } MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=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@DF75@ .

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