BMC Bioinformatics

Table 2 Comparison using JASPAR. Note that here EM is MEME [9].

From: DNA motif alignment by evolving a population of Markov chains

	Algorithms
w	WEE	EM	PRO	IMC	PMC
9	0.38	0.39	0.43	0.53	0.53
10	0.55	0.65	0.63	0.65	0.77
11	0.48	0.73	0.74	0.80	0.80
12	0.73	0.79	0.84	0.88	0.90
13	0.21	0.75	0.77	0.82	0.85
14	0.65	0.82	0.82	0.91	0.87
15	0.90	0.90	0.90	0.97	0.97
16	0.53	0.79	0.73	0.85	0.95
20	0.82	0.90	0.89	0.94	0.94
ave	0.58	0.75	0.75	0.82	0.84

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com