Exploiting structural and topological information to improve prediction of RNA-protein binding sites

BMC Bioinformatics

Table 5 Predictor comparison with other authors.

AUC	MCC	SN[%]	SP[%]	Classifier	Data set	Ref.	Features
0.79	0.34	68	75	NB	RB106	-	Profile
0.79	0.34	68	75	NB	RB106	-	Profile+aRC
0.80	0.38	58	85	NB	RB106	-	Profile+ASA+aBC+aRC
0.81	0.36	70	76	SVM	RB106	-	Profile
0.81	0.37	70	77	SVM	RB106	-	Profile+aRC
0.84	0.43	71	81	SVM	RB106	-	Profile+ASA+aBC+aRC
0.74	0.25	52	82	SVM	RB36	-	Profile
0.75	0.27	54	83	SVM	RB36	-	Profile+aRC
0.77	0.30	52	87	SVM	RB36	-	Profile+ASA+aBC+aRC
0.67	0.34	54	95	SVM	RB36	PPrint [8]	Profile
0.86	0.50	56	93	SVM	RNAset81	[11]	Profile+IP+pA+H
-	0.28	66	74	SVM	107	[8]	Profile
-	0.35	-	-	NB	RB109	[2]	Amino Acid

Comparison with other authors for data sets similar to RB109. Sequential patch for Profile and Profile+RC, spatial patch for Profile+ASA+BC+RC.

ISSN: 1471-2105