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Table 2 Training and test results for EC family classification using Peptide Programs

From: Enzyme classification with peptide programs: a comparative study

  Training Test
EC Family Accuracy Precision Recall MCC Accuracy Precision Recall MCC
1.1.1.1 99% 97% 87% 0,91 99% 94% 81% 0.87
1.1.1.25 100% 99% 94% 0,96 99% 93% 84% 0.88
1.8.4.11 100% 100% 100% 1,00 100% 100% 100% 1.00
2.1.2.10 100% 100% 100% 1,00 100% 98% 100% 0.99
2.3.2.6 100% 100% 100% 1,00 100% 100% 100% 1.00
2.5.1.55 100% 100% 100% 1,00 100% 98% 98% 0.97
2.7.1.11 100% 100% 96% 0,98 100% 100% 90% 0.95
2.7.1.21 99% 99% 86% 0,92 99% 97% 79% 0.87
2.7.2.1 100% 100% 100% 1,00 100% 100% 100% 1.00
2.7.7.27 100% 96% 93% 0,95 99% 93% 88% 0.90
3.1.26.11 100% 100% 99% 1,00 99% 93% 100% 0.96
3.5.4.19 100% 100% 97% 0,98 99% 100% 91% 0.95
4.1.1.31 100% 100% 100% 1,00 100% 98% 100% 0.99
4.2.3.4 100% 100% 100% 1,00 99% 100% 98% 0.98
5.1.1.1 100% 100% 100% 1,00 100% 100% 100% 1.00
5.1.1.3 100% 100% 100% 1,00 100% 100% 100% 1.00
5.3.1.24 99% 100% 93% 0,96 98% 95% 82% 0.87
6.3.4.3 100% 100% 100% 1,00 99% 98% 98% 0.97
Average 100% 100% 97% 0,98 99% 98% 94% 0.95
  1. All results were obtained with PP classifiers with 4 registers and 2 instructions per amino acid, except those of families 1.1.1.1 (which had 6 registers) and 1.8.4.11 (which had 2 registers and 1 instruction per amino acid).