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Table 8 The experimental results for pedigrees P13 to P16.

From: Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference

 

P13

P14

P15

P16

No. of Breakpoints

23.56 (46.66)

44.20 (124.0)

31.37 (48.25)

34.60 (69.26)

precision

0.97 (0.37)

0.98 (0.27)

0.96 (0.47)

0.88 (0.38)

recall

0.94 (0.71)

0.95 (0.75)

0.93 (0.71)

0.87 (0.75)

length of real linked region (cM)

21.36

18.22

21.41

18.40

length of found linked region (cM)

25.61 (25.91)

19.68 (20.42)

25.12 (27.60)

21.81 (22.39)

overlap/real

1.00 (1.00)

1.00 (1.00)

1.00 (1.00)

0.99 (1.00)

overlap/found

0.86 (0.84)

0.90 (0.89)

0.88 (0.81)

0.86 (0.85)

linked region recovery

1.00 (84/95)

1.00 (75/95)

1.00 (1.00)

1.00 (1.00)

  1. The meaning of each line is the same as in Table 2.