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Table 4 Fraction of consistent probe set pairs targeting the same gene in two networks.

From: Construction and use of gene expression covariation matrix

   

CORR

ANTI

chipset model 1

chipset model 2

network

#pairs

%sel

%com

#pairs

%sel

HG-U95

HG-U133

NR1

4600

64

40

4143

42

HG-U95

HG-U133

NR10

4769

67

34

4605

52

HG-U95

MG-U74v2

NR1

2061

53

45

1914

27

HG-U95

MG-U74v2

NR10

2093

50

42

2057

32

HG-U95

RG-U34

NR1

1603

51

65

1433

18

HG-U95

RG-U34

NR10

1653

48

60

1602

21

HG-U133

MG-U74v2

NR1

3285

65

45

3002

38

HG-U133

MG-U74v2

NR10

3332

65

37

3268

47

HG-U133

RG-U34

NR1

2230

58

65

1886

25

HG-U133

RG-U34

NR10

2316

58

54

2214

33

MG-U74v2

RG-U34

NR1

1503

63

59

1345

34

MG-U74v2

RG-U34

NR10

1554

59

51

1511

41

  1. The fraction is calculated with the best value of the multiple pairs category. For each comparison between two networks, the table indicates the chipset model of the first and second network (chipset model 1 and 2), the name of the networks (network), the number of probe set pairs considered (#pairs), and the percentage of probe set pairs (%sel) with a log10(neighbourhood similarity p-value) of less than -10 in networks constructed either on positive (CORR) or negative CVMs (ANTI). The column (%com) indicates the percentage of links shared between two sub-networks constructed by examining probe sets with more than 100 links and picking the first or second probe set from all the probe set pairs having a log10(p-value) < -10.