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Table 8 Statistics of hydrophobic residues within the context of hydropathy plots

From: Representative transcript sets for evaluating a translational initiation sites predictor

  

[0, 20)

[20, 40)

[40, 60)

[60, 80)

[80, 100]

  

PR

LR

PR

LR

PR

LR

PR

LR

PR

LR

H. sap.

I

7%

0%

54%

0%

33%

0%

6%

0%

0%

0%

 

II

2%

91%

56%

67%

41%

61%

1%

94%

0%

0%

 

III

3%

95%

53%

90%

43%

87%

2%

96%

0%

0%

M. mus.

I

6%

0%

50%

0%

33%

0%

10%

0%

0%

0%

 

II

2%

89%

51%

67%

42%

59%

5%

84%

0%

0%

 

III

3%

94%

52%

87%

41%

85%

4%

95%

0%

0%

C. ele.

I

7%

0%

50%

0%

33%

0%

10%

0%

0%

0%

 

II

2%

90%

55%

63%

40%

59%

2%

93%

0%

0%

 

III

3%

97%

56%

93%

36%

93%

3%

98%

0%

0%

D. mel.

I

7%

0%

56%

0%

32%

0%

4%

0%

0%

0%

 

II

2%

91%

56%

70%

40%

63%

1%

92%

0%

0%

 

III

3%

96%

60%

91%

37%

90%

1%

97%

0%

0%

  1. Given one continuous plot, the percentage is calculated by dividing the number of nucleotide residues that correspond to a positive (0 included) hydropathy index by that in a complete ORF.