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Table 5 The 15 KEGG pathways most relevant to the extracted gene modules

From: Clique-based data mining for related genes in a biomedical database

Rank

KEGG pathway [number of genes]

Gene module size

r J (intersection/union)

1

hsa00601 Blood Group Glycolipid Biosynthesis – Lact Series [6]

4

0.667 (4/6)

2

hsa00920 Sulfur Metabolism [7]

4

0.571 (4/7)

3

hsa00532 Chondroitin/Heparan Sulfate Biosynthesis [8]

6

0.556 (5/9)

4

hsa00140 C21-Steroid Hormone Metabolism [11]

7

0.500 (6/12)

5

hsa00040 Pentose and Glucuronate Interconversions [10]

5

0.500 (5/10)

6

hsa00400 Phenylalanine, Tyrosine and Tryptophan Biosynthesis [8]

3

0.375 (3/8)

7

hsa00511 Glycoprotein Degradation [8]

3

0.375 (3/8)

8

hsa03050 Proteasome [14]

5

0.357 (5/14)

9

hsa03020 RNA Polymerase [15]

5

0.333 (5/15)

10

hsa00530 Aminosugars Metabolism [9]

3

0.333 (3/9)

11

hsa00580 Phospholipid Degradation [9]

3

0.333 (3/9)

12

hsa00062 Fatty Acid Biosynthesis (path 2) [6]

2

0.333 (2/6)

13

hsa00602 Blood Group Glycolipid Biosynthesis – Neolact Series [6]

2

0.333 (2/6)

14

hsa00271 Methionine Metabolism [10]

3

0.300 (3/10)

15

hsa00790 Folate Biosynthesis [10]

3

0.300 (3/10)