Genotyping method | Taqman[22] | Sequenom[24] | |
---|---|---|---|
Assay design software | File Builder Assay-by-Design | Autoprimer | iPLEX |
URL | https://www2.appliedbiosystems.com/support/software/assaysbydesign/ | ||
Assay name | Letters, numbers, – (hyphen) only | Letters, numbers, – only | Letters, number, – only |
Space | Tab | Space | Space |
No. bases each side | 200–600 | 200 | 200 |
Allele [A/G] | Common first | - | - |
Additional information <other> | 1 = 201 (assay position) | Masked sequence | - |
Adjacent SNPs | N | IUPAC | Lower case |
Masking | N | N | Lower case |
Masked sequence | First sequence | Second sequence, not 25 bases either side of SNP | First sequence |