MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

Table 6 Classification for WTCCC study.

Chromosome	Picked SNPs	Total SNPs	Prediction Accuracy	Randomized test accuracy
1	154	39,428	0.947	0.512
2	109	40,641	0.968	0.565
3	153	33,121	0.932	0.523
4	127	31,343	0.926	0.486
5	151	31,601	0.905	0.498
6	130	31,133	0.915	0.546
7	126	25,412	0.938	0.553
8	109	26,954	0.927	0.523
9	143	23,246	0.905	0.552
10	125	28,222	0.881	0.482
11	132	26,005	0.905	0.516
12	113	24,721	0.887	0.492
13	86	18,913	0.896	0.504
14	94	15,436	0.865	0.511
15	112	14,192	0.911	0.504
16	115	15,070	0.903	0.532
17	101	11,128	0.887	0.513
18	135	14,633	0.893	0.522
19	85	6,286	0.885	0.540
20	106	12,266	0.874	0.503
21	80	7,014	0.892	0.496
22	76	6,124	0.924	0.533
OVERALL	223	451,288	0.926	0.513

ISSN: 1471-2105