BMC Bioinformatics

Table 3 10 K breakpoint recovery results at the presence of missing data

From: Most parsimonious haplotype allele sharing determination

	0.5%		1%		1.5%		2%		2.5%		3%
Pedigree	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall
2-2	0.998	0.968	0.998	0.926	0.997	0.941	0.998	0.937	0.987	0.946	1.000	0.944
2–3	0.983	0.969	0.997	0.968	0.989	0.970	0.998	0.967	0.993	0.967	0.989	0.948
2-3-1	0.994	0.973	0.994	0.959	0.986	0.959	0.986	0.947	0.988	0.952	0.992	0.968
2-3-2	0.981	0.968	0.981	0.971	0.984	0.947	0.984	0.947	0.985	0.950	0.985	0.945
2-3-3	0.989	0.974	0.967	0.967	0.990	0.962	0.962	0.962	0.969	0.950	0.983	0.958
2-3-5	0.974	0.972	0.966	0.966	0.964	0.960	0.960	0.961	0.970	0.954	0.959	0.951
2-4-3	0.984	0.964	0.985	0.960	0.985	0.953	0.986	0.964	0.978	0.950	0.99	0.956
2-5-4	0.980	0.952	0.984	0.953	0.979	0.950	0.984	0.940	0.983	0.939	0.980	0.932
2-5-5	0.980	0.961	0.971	0.958	0.980	0.947	0.983	0.947	0.982	0.935	0.973	0.930
2-6-5	0.985	0.952	0.987	0.952	0.984	0.939	0.983	0.930	0.982	0.922	0.984	0.911
Average	0.985	0.965	0.983	0.958	0.984	0.950	0.983	0.950	0.982	0.947	0.984	0.944

Breakpoint recovery results: Average breakpoint recovery precision and recall by i Linker at the presence of 0.5–3% missing genotype data.

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