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Table 2 Variations of the prevailing pattern "SP.NP.G".

From: Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation

Exact pattern discovery

    

S

P

.

N

P

.

G

      

P

.

N

P

T

G

      

P

N

N

P

.

G

       

N

N

P

T

 
     

S

P

.

N

.

.

G

     

S

.

.

N

P

.

G

    

T

.

.

.

N

P

.

G

Chemical equivalency set

    

[ST]

P

.

N

P

T

G

     

[ST]

P

N

N

P

.

G

   

[ILMV]

.

.

P

.

N

P

.

G

     

[ST]

P

N

.

.

T

[AG]

     

[ST]

P

.

N

P

.

G

      

P

N

N

P

[ST]

 
   

[ILMV]

.

[ST]

.

N

.

.

.

G

    

[QN]

[ST]

P

.

N

.

[ST]

 
 

[ILMV]

.

.

.

[ST]

P

.

N

.

T

 

Structural equivalency set

    

[CS]

.

.

N

P

T

G

   

[ITV]

.

.

P

.

N

P

.

G

    

[CS]

.

P

N

N

P

  
   

[ITV]

.

S

P

.

[DLN]

P

  
      

P

.

N

P

T

G

      

P

N

N

P

.

G